cellpose
v1.0.2
Basics:
Installation
GUI
Inputs
Settings
Outputs
Training
Examples:
In a notebook
Command line
API Reference:
Cellpose API Guide
cellpose
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Index
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
A
aggregated_jaccard_index() (in module cellpose.metrics)
average_precision() (in module cellpose.metrics)
average_tiles() (in module cellpose.transforms)
B
boundary_scores() (in module cellpose.metrics)
C
Cellpose (class in cellpose.models)
cellpose.dynamics
module
cellpose.metrics
module
cellpose.plot
module
cellpose.transforms
module
CellposeModel (class in cellpose.models)
compute_masks() (in module cellpose.dynamics)
convert_image() (in module cellpose.transforms)
D
disk() (in module cellpose.plot)
dx_to_circ() (in module cellpose.plot)
E
eval() (cellpose.models.Cellpose method)
(cellpose.models.CellposeModel method)
(cellpose.models.SizeModel method)
F
flow_error() (in module cellpose.metrics)
follow_flows() (in module cellpose.dynamics)
G
get_masks() (in module cellpose.dynamics)
I
image_to_rgb() (in module cellpose.plot)
interesting_patch() (in module cellpose.plot)
L
labels_to_flows() (in module cellpose.dynamics)
loss_fn() (cellpose.models.CellposeModel method)
M
make_tiles() (in module cellpose.transforms)
map_coordinates() (in module cellpose.dynamics)
mask_ious() (in module cellpose.metrics)
mask_overlay() (in module cellpose.plot)
mask_rgb() (in module cellpose.plot)
masks_to_flows() (in module cellpose.dynamics)
masks_to_flows_cpu() (in module cellpose.dynamics)
masks_to_flows_gpu() (in module cellpose.dynamics)
module
cellpose.dynamics
cellpose.metrics
cellpose.plot
cellpose.transforms
move_axis() (in module cellpose.transforms)
move_min_dim() (in module cellpose.transforms)
N
normalize99() (in module cellpose.transforms)
normalize_img() (in module cellpose.transforms)
O
original_random_rotate_and_resize() (in module cellpose.transforms)
outline_view() (in module cellpose.plot)
P
pad_image_ND() (in module cellpose.transforms)
R
random_rotate_and_resize() (in module cellpose.transforms)
remove_bad_flow_masks() (in module cellpose.dynamics)
reshape() (in module cellpose.transforms)
reshape_and_normalize_data() (in module cellpose.transforms)
reshape_train_test() (in module cellpose.transforms)
resize_image() (in module cellpose.transforms)
S
show_segmentation() (in module cellpose.plot)
SizeModel (class in cellpose.models)
step_factor() (in module cellpose.dynamics)
steps2D() (in module cellpose.dynamics)
steps3D() (in module cellpose.dynamics)
T
train() (cellpose.models.CellposeModel method)
(cellpose.models.SizeModel method)
U
unaugment_tiles() (in module cellpose.transforms)
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v: v1.0.2
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